CUBE saves your session automatically after every completed step, to a file named autosave.pipeline_session.json in the Output folder shown at the top of the main window. The session holds your video folders, group labels, parameter settings, step-completion flags and the DLC model state. It does not hold the numerical data, which stays in the output files.
To continue later:
- Start CUBE again.
- Click Load (top right) and choose the session file. Your folders and settings are restored, and the step cards show which steps are complete.
- Run the next step.
Click Save to keep a named copy of the session at any time, for example one per experiment.
Compatibility Mode#
Version 2.1 corrected several defaults. To reproduce results from an earlier run exactly:
- Open Advanced CUBE Analysis.
- Under Reproducibility and Methodology, set Compatibility mode to
legacy_v2.
This restores the earlier values of umap_min_dist (0.0 instead of 0.1), hdbscan_mcs_anchor (full instead of embedding) and angular_fallback (on instead of off). A setting you changed yourself is never overridden. The version of the defaults is stamped into feature_config.json and validation_report.json, so each output folder records which defaults were used.